According to Microsoft, the limit of the number of GPOs that you can apply to an object is 999. The article listed below did not give a limit on the total number of GPOs that you can have, but only a limit on how many that can be applied to a single object.
Reference: http://technet.microsoft.com/en-us/library/active-directory-maximum-limits-scalability(WS.10).aspx#BKMK_GPO
Reference: http://technet.microsoft.com/en-us/library/active-directory-maximum-limits-scalability(WS.10).aspx#BKMK_GPO
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